Quality Control And Differentiall Gene Expression Results
This Is A Report Of Quality Control And Differentail Gene Expression Analysis.
Differential Gene Expression Approach Used: DESeq2
Cutoffs To Establish Differentially Regulated Genes: |Log2FC| > 1 & padj < 0.05
PCA Plots
2D PCA on DESeq2’s Normalized Counts
Total Explained Variance = 81.085%
3D PCA on DESeq2’s Normalized Counts
Total Explained Variance = 88.267%
2D PCA on DESeq2’s Normalized Counts
Total Explained Variance = 90.092%
3D PCA on DESeq2’s Normalized Counts
Total Explained Variance = 95.176%
Dendrograms representing sample clustering
Dendrogram on DESeq2’s Normalized Counts
Dendrogram on DESeq2 normalized counts with only DEGs
Volcano Plots
Differentially Regulated Genes - Visualized Interactively